PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01609.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 504aa    MW: 55887.8 Da    PI: 7.7895
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01609.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0597119123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C+k F r  nL+ H r H
  Rsa1.0_01609.1_g00001.1  97 FVCEICNKGFQRDQNLQLHRRGH 119
                              89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.14E-696119No hitNo description
Gene3DG3DSA:3.30.160.601.7E-596119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94997119IPR007087Zinc finger, C2H2
SMARTSM003550.01797119IPR015880Zinc finger, C2H2-like
PfamPF121718.0E-597119IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SMARTSM00355170139169IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.14E-6169194No hitNo description
SMARTSM00355180174194IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MMNEDILLHQ QVHQQQEENM SNLTSASGDQ ASVSSGNRTE VSGSNYFPHH HQQEEQQQFI  60
VPESQPQKKR RNQPGNPDPE SEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN  120
LPWKLKQRSN KEVIRKKVYV CPEESCVHND PSRALGDLTG IKKHFCRKHG EKKWKCDKCS  180
KKYAVQSDCK AHSKTCGTKE YRCDCGTLFS RRDSFITHRA FCEALAEETA REVVIPQNQN  240
HQPNPLMIQQ SSSSSSHHHQ AQPTVNISSC SSSSHNIINS LHFETNHNGT NNSNTNSNHL  300
HTFPMKIEQQ QSNDHIISYH QHIIPPWLTS PNPNPSNGGG GLFSLAASPA MSATALLQKA  360
AQMGSTKSPP LPPNTDSERP AHHNNNLTTK MASMMTSPSG FISSNNSNNQ VLFQDYNASE  420
FDHHGGEEAF DDTFGGFLRT NVDTTTTSGS DKNKSGGGGG EGLTRDFLGL RPLMSHNEIL  480
SFAGLGNCIN GSASDQLHPK PWQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123136KLKQRSNKEVIRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00355DAPTransfer from AT3G13810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610759.10.0PREDICTED: protein indeterminate-domain 11-like isoform X1
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A0D3ADV30.0A0A0D3ADV3_BRAOL; Uncharacterized protein
STRINGBra021510.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11